Take a look ate this...might help...https://forum.getmonero.org/5/support/87735/missing-funds-99-022-xmr
Missing Monero
Hey guys, I am new to Monero but been involved with Bitcoin since 2011... I recently converted BTC to XMR using shapeshift.io and had the proceeds deposited into my MyMonero wallet which seemed to clear fine. I then downloaded Monero GUI beta 2 and transferred into the new wallet address. This is where the Monero seems to have disappeared. I didn't use the integrated address, just the normal address which is where I may have gone wrong. Another possibility is that MyMonero may have scammed me.
Any thoughts?